Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
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Updated
Aug 3, 2023 - Shell
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
All-in-one analysis pipeline
Sanger Cellular Genetics single-cell ATAC-seq pipeline.
Pipeline codes for analyzing various genomics datasets based on MACS3
Pipeline for processing epigenomic NGS data.
Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files.
Instructions on how to perform chromatin accessibility data pre-processing and analyses (focusing on bulk ATAC-seq)
Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.
ATAC-Seq analysis. (Ali T. Abdallah)
Workflow Template
CCBR pipeline for preliminary QC and peak calling from ATACseq datasets
A comprehensive source for Stathopoulos lab code generated and used in data analysis.
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