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Improve website on parameters section Alignment Options for argument --save_unaligned
enhancement
New feature or request
#359
opened Mar 20, 2024 by
aghr
Get template v2.13.1 (get rid of lib)
enhancement
New feature or request
#356
opened Mar 20, 2024 by
JoseEspinosa
Please pin the version of the nf-validation plugin!
enhancement
New feature or request
#354
opened Mar 8, 2024 by
mirpedrol
Remove lib library
enhancement
New feature or request
WIP
Work in progress
#353
opened Mar 5, 2024 by
JoseEspinosa
suggestion: use samtools view --uncompressed before piping in bamtools_filter
enhancement
New feature or request
#346
opened Jan 26, 2024 by
lindenb
Feature Request: summary table for each sample
enhancement
New feature or request
#345
opened Jan 26, 2024 by
lindenb
Increase memory allocation for BEDTOOLS_GENOMECOV
enhancement
New feature or request
#344
opened Dec 22, 2023 by
SPPearce
bam_csi_index parameter for ATACSeq
enhancement
New feature or request
#343
opened Dec 20, 2023 by
BianyunY-ACRD
implement the bam_csi_index parameter in atacseq pipeline
enhancement
New feature or request
#340
opened Oct 27, 2023 by
BianyunY-ACRD
Process terminated for an unknown reason (SLURM)
bug
Something isn't working
#339
opened Oct 16, 2023 by
hdbeukel
the sample field from the samplesheet is too lenient
bug
Something isn't working
#338
opened Oct 9, 2023 by
maxulysse
Error executing process > 'NFCORE_ATACSEQ:ATACSEQ:CUSTOM_DUMPSOFTWAREVERSIONS (1)'
bug
Something isn't working
#330
opened Aug 18, 2023 by
anijudy
Add GRCm39 option to config
enhancement
New feature or request
#273
opened May 2, 2023 by
laurenhsu1
Biotype analysis using featureCounts
enhancement
New feature or request
#188
opened Aug 11, 2022 by
chuan-wang
Peak calling parameters might not be ideal
enhancement
New feature or request
#169
opened Feb 17, 2022 by
ktrns
Genome annotation (gene names) missing in IGV session file
enhancement
New feature or request
#168
opened Feb 17, 2022 by
ktrns
Does nf-core/atacseq apply an offset to each ATAC-seq fragment?
question
Further information is requested
Adding the feature of shifting and splitting the reads
enhancement
New feature or request
#91
opened Mar 4, 2020 by
husaynahmed
Implement Hidden-Markow-Models implemented in ChromstaR for genome-wide characterization of open chromatin landscape
enhancement
New feature or request
#89
opened Feb 28, 2020 by
Temperche
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