Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
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Updated
Jan 31, 2024 - C
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
Works completed within the SQL module of the Data Analyst course on the Karpov Courses platform
GQuery is a software tool for rapidly querying large numbers of bgzip compressed, tabix indexed genomic data files e.g. vcf, maf, bed, bedGraph, etc. from multiple species with different genome builds without the need to develop, debug, and maintain custom file parsers. Search for particular germline or somatic mutations, copy number changes, di…
Tabix.io UI
Sample Clickhouse cluster deployment with chproxy
docker-compose for tabix, clickhouse-server and mariadb
A nodejs-based service for requests for tabix-indexed genomic data
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