Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
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Updated
Mar 27, 2024
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
GREIN : GEO RNA-seq Experiments Interactive Navigator
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
Interactive R package to quantify, analyse and visualise alternative splicing
Estimation of Promoter Activity from RNA-Seq data
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis
M5NRv2 -- non-redundant protein and rRNA database integration
🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.
Useful R functions for Multi-omics analyses
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
Sample Data for MMAPPR2
Epigenomics workflow system for the semi-automated analysis of NGS data
RNA-Seq tutorial materials - slides, training data, code lines
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