Performing RNA-seq data analysis with DESeq2 package of bioconductor
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Updated
Feb 27, 2023 - R
Performing RNA-seq data analysis with DESeq2 package of bioconductor
This is a repository for a pipeline used to identify imprinted genes or allele specific expressions using Illumina next generation sequencing (NGS) platform. This repository contains a work in progress to identify imprinted genes in polyploid species.
Performing RNA-Seq data analysis and quality control using DESeq2 in R.
R package to create heatmaps using signature gene list and transcriptomic data
Build highly accurate transcripts from long-read RNA data
eproduciton of a publication regarding gene expression in different phases of lactation in humans
Perform RNA-seq data analysis with edgeR package of bioconductor
Website (.NET Core MVC architecture) for the RytenLab team (https://rytenlab.com/). It also contains the specification for the .NET Core REST API of the RytenLab Team (https://rytenlab.com/swagger/index.html).
Scripts used to analyze tomato meta-transcriptome from short-read host RNA-seq data in Chialva et al. (2020)
A repository for RNA-seq workflow
A repository for code that generates various simulated data.
Predicting NCSU Coastal Breeding Values using RNA Seq data
DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
Collection of scripts to map eQTL with RNAseq Data and Genotype by Sequencing
Sample Data for MMAPPR2
Epigenomics workflow system for the semi-automated analysis of NGS data
RNA-Seq tutorial materials - slides, training data, code lines
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